| 07/07/06 | A | Eastleigh (Friendly) | 7.45 | 1 – 3 |
| 12/07/06 | A | Bodmin Town (Friendly) | 7.30 | 0 – 5 |
| 14/07/06 | A | St Blazey AFC (Friendly) | 7.30 | 1 – 6 |
| 18/07/06 | H | Exeter City (Friendly) | 7.45 | 2 – 0 |
| 21/07/06 | H | Portsmouth (Friendly) | 7.45 | 0 – 2 |
| 25/07/06 | A | Plymouth Argyle (Friendly) | 7.45 | 2 – 0 |
| 29/07/06 | A | Weymouth (Friendly) | 3.00 | 0 – 3 |
| 31/07/06 | A | Tiverton Town (Friendly) | 7.45 | 0 – 1 |
| 05/08/06 | A | Millwall | 3.00 | 1 – 1 |
| 08/08/06 | H | AFC Bournemouth | 7.45 | 0 – 0 |
| 12/08/06 | H | Carlisle United | 3.00 | 2 – 1 |
| 19/08/06 | A | Tranmere Rovers | 3.00 | 2 – 1 |
| 23/08/06 | A | Southampton – Carling Cup 1 round | 7.45 | 5 – 2 |
| 26/08/06 | H | Port Vale | 3.00 | 1 – 0 |
| 02/09/06 | A | Swansea City | 7.45 | 1 – 1 |
| 09/09/06 | H | Nottingham Forest | 3.00 | 0 – 1 |
| 12/09/06 | A | Northampton Town | 7.45 | 1 – 1 |
| 16/09/06 | A | Huddersfield Town | 3.00 | 2 – 3 |
| 23/09/06 | H | Crewe Alexandra | 3.00 | 2 – 0 |
| 26/09/06 | H | Brighton & Hove Albion | 7.45 | 2 – 0 |
| 30/09/06 | A | Brentford | 3.00 | 1 – 2 |
| 07/10/06 | H | Cheltenham Town | 7.45 | 0 – 1 |
| 14/10/06 | A | Blackpool | 3.00 | 1 – 1 |
| 21/10/06 | H | Oldham Athletic | 3.00 | 1 – 0 |
| 28/10/06 | A | Chesterfield United | 3.00 | 1 – 1 |
| 31/10/06 | A | Shrewsbury Town – JP Trophy 2 round | 7.45 | 2 – 1 |
| 04/11/06 | H | Bristol City | 3.00 | 2 – 1 |
| 11/11/06 | A | Rushden & Diamonds – FA Cup 1 round | 3.00 | 3 – 1 |
| 18/11/06 | A | Leyton Orient | 3.00 | 0 – 0 |
| 25/11/06 | H | Scunthorpe United | 3.00 | 0 – 2 |
| 02/12/06 | A | Rotherham United | 3.00 | 3 – 2 |
| 09/12/06 | H | Gillingham | 3.00 | 2 – 0 |
| 16/12/06 | A | Doncaster Rovers | 3.00 | P – P |
| 23/12/06 | H | Bradford City | 3.00 | 0 – 0 |
| 26/12/06 | A | Brighton & Hove Albion | 3.00 | 1 – 3 |
| 30/12/06 | A | Crewe Alexandra | 3.00 | 2 – 3 |
| 01/01/07 | H | Northampton Town | 3.00 | 0 – 0 |
| 05/01/07 | H | Huddersfield Town | 7.45 | 3 – 1 |
| 13/01/07 | A | Nottingham Forest | 3.00 | 1 – 0 |
| 20/01/07 | H | Brentford | 3.00 | 1 – 0 |
| 27/01/07 | A | Bradford City | 3.00 | 0 – 2 |
| 03/02/07 | H | Millwall | 3.00 | 0 – 1 |
| 10/02/07 | A | Carlisle United | 3.00 | 1 – 4 |
| 17/02/07 | H | Tranmere Rovers | 3.00 | 0 – 2 |
| 20/02/07 | A | AFC Bournemouth | 7.45 | 0 – 2 |
| 24/02/07 | H | Swansea City | 3.00 | 1 – 0 |
| 27/02/07 | A | Doncaster Rovers | 3.00 | 0 – 0 |
| 03/03/07 | A | Port Vale | 3.00 | 4 – 2 |
| 10/03/07 | A | Cheltenham Town | 3.00 | 1 – 2 |
| 17/03/07 | H | Blackpool | 3.00 | 0 – 1 |
| 24/03/07 | H | Chesterfield United | 3.00 | 1 – 0 |
| 31/03/07 | A | Oldham Athletic | 3.00 | 1 – 0 |
| 06/04/07 | A | Scunthorpe United | 7.30 | 1 – 0 |
| 09/04/07 | H | Leyton Orient | 3.00 | 2 – 1 |
| 14/04/07 | A | Bristol City | 3.00 | 2 – 0 |
| 21/04/07 | H | Rotherham United | 3.00 | 1 – 0 |
| 28/04/07 | H | Doncaster Rovers | 3.00 | 1 – 0 |
| 05/05/07 | A | Gillingham | 3.00 | 0 – 2 |
| 11/05/07 | H | Nottingham Forest – Play off Semi-Final 1 leg | 7.45 | 0 – 2 |
| 18/05/07 | A | Nottingham Forest – Play off Semi-Final 2 leg | 7.45 | 2 – 5 |
| 27/05/07 | A | Blackpool – Play off Final | 3.00 | 0 – 2 |