| 17/07/08 | A | Potters Bar Town (Friendly) | 7.45 | 2 – 3 |
| 19/07/08 | H | Barnsley (Friendly) | 3.00 | 2 – 0 |
| 21/07/08 | H | Bristol City (Friendly) | 7.45 | 0 – 3 |
| 29/07/08 | A | Plymouth (Friendly) | 7.45 | 1 – 0 |
| 30/07/08 | A | Hillindon Borough (Friendly) | 7.45 | 0 – 3 |
| 02/08/08 | A | Weymouth (Friendly) | 3.00 | 0 – 1 |
| 04/08/08 | A | Tiverton Town (Friendly) | 7.45 | 1 – 2 |
| 09/08/08 | H | Walsall | 3.00 | 1 – 1 |
| 12/08/08 | A | Charlton Athletic – Carling Cup 1 round | 7.45 | 0 – 1 |
| 16/08/08 | A | Hereford United | 3.00 | 1 – 2 |
| 23/08/08 | H | Leeds United | 1.00 | 1 – 1 |
| 26/08/08 | A | Middlesbrough United – Carling Cup 2 round | 7.45 | 5 – 1 |
| 30/08/08 | A | Carlisle United | 3.00 | 4 – 1 |
| 02/09/08 | A | Brentford – JP Trophy 1 round | 7.45 | 2 – 2 |
| 06/09/08 | A | MK Dons | 3.00 | 3 – 0 |
| 13/09/08 | H | Brighton & Hove Albion | 3.00 | 1 – 1 |
| 20/09/08 | H | Bristol Rovers | 3.00 | 2 – 2 |
| 27/09/08 | A | Scunthorpe United | 3.00 | 2 – 0 |
| 04/10/08 | H | Southend United | 3.00 | 1 – 2 |
| 11/10/08 | A | Leicester City | 3.00 | P – P |
| 18/10/08 | A | Northampton | 3.00 | 3 – 0 |
| 21/10/08 | H | Crewe Alexandra | 7.45 | 3 – 2 |
| 25/10/08 | H | Leyton Orient | 3.00 | 0 – 0 |
| 28/10/08 | A | Huddersfield Town | 7.45 | 0 – 0 |
| 01/11/08 | A | Oldham | 3.00 | 0 – 2 |
| 08/11/08 | H | Stockport County – FA Cup 1 round | 3.00 | 1 – 1 |
| 11/11/08 | A | Leicester City | 3.00 | 1 – 0 |
| 15/11/08 | H | Peterborough United | 3.00 | 0 – 1 |
| 18/11/08 | A | Stockport County – FA Cup 1 round replay | 7.45 | 5 – 0 |
| 22/11/08 | H | Tranmere Rovers | 3.00 | 1 – 0 |
| 25/11/08 | A | Colchester United | 7.45 | 1 – 0 |
| 06/12/08 | A | Hartlepool | 3.00 | 0 – 0 |
| 13/12/08 | H | Stockport County | 3.00 | 2 – 4 |
| 20/12/08 | A | Swindon Town | 3.00 | 2 – 3 |
| 26/12/08 | H | Cheltenham Town | 3.00 | 1 – 1 |
| 28/12/08 | A | Millwall | 3.00 | 1 – 1 |
| 06/01/09 | H | Scunthorpe United | 7.45 | P – P |
| 10/01/09 | A | Bristol Rovers | 3.00 | P – P |
| 13/01/09 | H | Scunthorpe United | 7.45 | 1 – 2 |
| 19/01/09 | H | Leicester City | 7.45 | 0 – 2 |
| 24/01/09 | A | Southend | 3.00 | 0 -1 |
| 27/01/09 | H | Huddersfield Town | 7.45 | 1 – 0 |
| 31/01/09 | A | Leyton Orient | 3.00 | 0 – 1 |
| 03/02/09 | A | Crewe Alexander | 7.45 | P – P |
| 07/02/09 | H | Northampton Town | 3.00 | P – P |
| 14/02/09 | A | Peterborough United | 3.00 | 1 – 3 |
| 17/02/09 | A | Bristol Rovers | 7.45 | 3 – 0 |
| 21/02/09 | H | Oldham Athletic | 3.00 | 2 – 2 |
| 24/02/09 | A | Crewe Alexander | 7.45 | 2 – 0 |
| 28/02/09 | A | Walsall | 3.00 | 2 – 0 |
| 03/03/09 | H | Hereford United | 7.45 | P – P |
| 07/03/09 | H | Carlisle United | 3.00 | 1 – 1 |
| 10/03/09 | A | Leeds United | 7.45 | 4 – 0 |
| 14/03/09 | A | Brighton & Hove Albion | 3.00 | 5 – 0 |
| 21/03/09 | H | MK Dons | 3.00 | 0 – 0 |
| 28/03/09 | H | Swindon Town | 3.00 | 1 – 0 |
| 31/03/09 | H | Northampton Town | 7.45 | 1 – 0 |
| 04/04/09 | A | Stockport County | 3.00 | 0 – 0 |
| 10/04/09 | H | Millwall | 3.00 | 2 – 0 |
| 13/04/09 | A | Cheltenham Town | 3.00 | 1 – 0 |
| 18/04/09 | H | Hartlepool | 3.00 | 2 – 3 |
| 21/04/09 | H | Hereford United | 7.45 | 2 – 2 |
| 25/04/09 | A | Tranmere Rovers | 3.00 | 1 – 1 |
| 02/05/09 | H | Colchester United | 3.00 | 0 – 2 |