| 14/07/12 | A | Hereford United (Friendly) | 3.00 | 1 – 1 |
| 17/07/12 | A | Poole Town (Friendly) | 7.45 | 0 – 2 |
| 21/07/12 | H | Plymouth Argyle (Friendly) | 3.00 | 5 – 0 |
| 24/07/12 | A | Dorchester (Friendly) | 7.45 | 0 – 4 |
| 28/07/12 | H | Bristol Rovers (Friendly) | 12.00 | 1 – 1 |
| 07/08/12 | H | Stoke City (Friendly) | 7.45 | 1 – 1 |
| 11/08/12 | H | Exeter City (Friendly) | 3.00 | 2 – 2 |
| 14/08/12 | H | Colchester United – Capital One Cup 1 Round | 7.45 | 3 – 0 |
| 18/08/12 | H | Coventry City | 3.00 | 1 – 1 |
| 21/08/12 | A | Brentford | 7.45 | 1 – 3 |
| 25/08/12 | A | Scunthorpe United | 3.00 | 0 – 4 |
| 28/08/12 | H | West Bromwich Albion – Capital One Cup 2 Round | 7.45 | 2 – 4 |
| 01/09/12 | H | Doncaster Rovers | 3.00 | 2 – 1 |
| 05/09/12 | A | Bristol Rovers – JP Trophy 1 Round | 7.45 | 0 – 3 |
| 08/09/12 | H | AFC Bournemouth | 3.00 | 0 – 1 |
| 15/09/12 | A | MK Dons | 3.00 | 1 – 0 |
| 18/09/12 | A | Leyton Orient | 7.45 | 4 – 1 |
| 22/09/12 | H | Sheffield United | 3.00 | 0 – 1 |
| 29/09/12 | A | Preston North End | 3.00 | 3 – 2 |
| 02/10/12 | H | Portsmouth | 7.45 | 1 – 2 |
| 06/10/12 | H | Colchester United | 3.00 | 3 – 1 |
| 10/10/12 | A | Torquay United – JP Trophy 2 Round | 7.45 | P – P |
| 13/10/12 | A | Tranmere Rovers | 3.00 | 3 – 2 |
| 16/10/12 | A | Torquay United – JP Trophy 2 Round | 7.45 | 2 – 2 |
| 20/10/12 | H | Bury | 3.00 | 2 – 1 |
| 23/10/12 | A | Shrewsbury Town | 7.45 | 1 – 3 |
| 27/10/12 | A | Crewe Alexandra | 3.00 | 0 – 1 |
| 03/11/12 | A | Preston North End – FA Cup 1 Round | 3.00 | 3 – 0 |
| 06/11/12 | H | Stevenage Borough | 7.45 | 1 – 3 |
| 10/11/12 | H | Hartlepool United | 3.00 | 1 – 0 |
| 17/11/12 | A | Swindon Town | 3.00 | 4 – 1 |
| 20/11/12 | A | Crawley Town | 7.45 | 0 – 1 |
| 24/11/12 | H | Carlisle United | 3.00 | 1 – 3 |
| 04/12/12 | H | Wycombe Wonderers – JP Trophy Area quarter-finals | 7.45 | 2 – 0 |
| 08/12/12 | H | Notts County | 3.00 | 0 – 0 |
| 15/12/12 | A | Walsall | 3.00 | 2 – 2 |
| 22/12/12 | H | Oldham Athletic | 3.00 | 4 – 1 |
| 26/12/12 | A | AFC Bournemouth | 3.00 | 3 – 0 |
| 29/12/12 | A | Portsmouth | 3.00 | 1 – 2 |
| 01/01/13 | H | Leyton Orient | 3.00 | 3 – 0 |
| 07/01/13 | A | Leyton Orient – JP Trophy Area semi-finals | 7.45 | 1 – 0 |
| 12/01/13 | A | Sheffield United | 3.00 | 0 – 2 |
| 19/01/13 | H | Preston North End | 3.00 | P – P |
| 29/01/13 | H | MK Dons | 7.45 | 2 – 1 |
| 02/02/13 | H | Brentford | 3.00 | 3 – 0 |
| 05/02/13 | A | Oldham Athletic | 7.45 | P – P |
| 09/02/13 | A | Coventry City | 3.00 | 0 – 1 |
| 12/02/13 | H | Preston North End | 7.45 | 3 – 1 |
| 16/02/13 | H | Scunthorpe United | 3.00 | 3 – 0 |
| 23/02/13 | A | Doncaster Rovers | 3.00 | 1 – 1 |
| 26/02/13 | A | Colchester United | 7.45 | 2 – 0 |
| 02/03/13 | H | Tranmere Rovers | 3.00 | 1 – 0 |
| 09/03/13 | A | Hartlepool United | 3.00 | 0 – 0 |
| 12/03/13 | H | Crawley Town | 7.45 | 2 – 2 |
| 19/03/13 | H | Swindon Town | 7.45 | 0 – 2 |
| 23/03/13 | A | Carlisle United | 3.00 | 3 – 3 |
| 30/03/13 | H | Walsall | 3.00 | 0 – 0 |
| 01/04/13 | A | Notts County | 3.00 | 1 – 2 |
| 06/04/13 | H | Shrewsbury Town | 3.00 | 2 – 1 |
| 13/04/13 | A | Stevenage Borough | 3.00 | 0 – 2 |
| 16/04/13 | A | Oldham Athletic | 7.45 | 1 – 0 |
| 20/04/13 | H | Crewe Alexandra | 3.00 | 1 – 0 |
| 27/04/13 | A | Bury | 3.00 | 3 – 2 |
| 03/05/13 | A | Sheffield United – Play off Semi-Final 1 leg | 7.45 | 1 – 0 |
| 06/05/13 | H | Sheffield United – Play off Semi-Final 2 leg | 1.30 | 2 – 0 |
| 19/05/13 | A | Play off Final | 1.30 | 1 – 2 |